You mean wiring the antenna or the electrical part.
For Antenna: On both the right and left side of our JK's(or maybe its just mine) there are a bunch of wires running to the back of the jump that are zip tied. I would just run the coax with those wires. From the CB to the side I would put run it under the seat, there are some wires already running there.
Electrical Part: You can either connect it to the fuse box or directly to the battery.
Where are you mounting you putting your antenna?